Validation Results for NCPIFHIRImplementationGuide

Generated Fri Oct 07 18:22:05 UTC 2022, FHIR version 4.0.1 for NCPI-FHIR-Implementation-Guide#0.2.0 (canonical = https://nih-ncpi.github.io/ncpi-fhir-ig (history)). See Errors Only

Quality Checks
Publisher Version:IG Publisher Version: v1.2.5
Publication Code:n/a . PackageId = NCPI-FHIR-Implementation-Guide, Canonical = https://nih-ncpi.github.io/ncpi-fhir-ig
Realm Check for n/a:
  • n/a
Version Check:0.2.0: no package-list.json - the guide is not ready for publishing
Supressed Messages:No Suppressed Issues
Dependency Checks:
PackageVersionFHIR ReleaseCanonicalWeb BaseComment
.. NCPI-FHIR-Implementation-Guide0.2.04.0.1https://nih-ncpi.github.io/ncpi-fhir-ig
... hl7.terminology.r44.0.0 M4.0.1http://terminology.hl7.orghttp://terminology.hl7.org/4.0.0
... hl7.fhir.us.core3.1.1 O4.0.1http://hl7.org/fhir/us/corehttp://hl7.org/fhir/us/core/STU3.1.1Latest Release is 5.0.1
Templates: fhir.base.template#0.2.2
Dependent IGs:no references
Publication Rules:Code = n/a. n/a - not an HL7.org or FHIR.org implementation guide

The copyrightYear parameter ('2021+') in the IG resource is good
HTA Analysis:Non-HL7 Igs are exempt from terminology dependency analysis
R5 Dependencies:(none)
Modifier Extensions:(none)
Previous Version Comparison: Unable to compare with previous version: Unable to find version history at https://nih-ncpi.github.io/ncpi-fhir-ig (Problem #1 with package-list.json at https://nih-ncpi.github.io/ncpi-fhir-ig: Invalid HTTP response 404 from https://nih-ncpi.github.io/ncpi-fhir-ig/package-list.json?nocache=1665166880525 (Not Found) (content in /tmp/fhir-http-3.log))
IPA Comparison: n/a
Summary: errors = 26, warn = 26, info = 10, broken links = 0
FilenameErrorsWarningsHints
Build Errors000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ConditionInheritanceMode021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo211
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi311
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-data-types311
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes410
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs211
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Condition-disease-example-1010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Condition-phenotype-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DiagnosticReport-diagnostic-report-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DocumentReference-drs-document-reference-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DocumentReference-research-document-reference-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Group-ncpi-research-study-01-group-01-main000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide020
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-anvil-summary-cmg030
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-anvil-summary-phs000711080
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-diagnostic-implication-1001
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-4000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-variant-example-1003
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Organization-organization-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-ncpi-research-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-ncpi-research-study-01-patient-02000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Practitioner-practitioner-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/PractitionerRole-practitioner-role-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-ncpi-research-study-01010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-cmg010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-phs000711010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-02000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Specimen-specimen-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-disease000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-family-relationship000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-drs-attachment000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-drs-document-reference000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-research-document-reference000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-research-study001
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-specimen-task000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-phenotype000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-group200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-supporting-info000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Task-task-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Task-task-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-condition-inheritance-vs010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-disease-codes000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-loinc-answers000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-ncpi-vs010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-phenotype-codes000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes200

n/a Show Validation Information

fsh-generated/resources/CodeSystem-ConditionInheritanceMode.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

fsh-generated/resources/CodeSystem-hpo.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://purl.obolibrary.org/obo/hp.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-hpoerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo vs http://purl.obolibrary.org/obo/hp.owl

fsh-generated/resources/CodeSystem-loinc-answers.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'ncpi:loinc-answers')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers) does not match the URL (ncpi:loinc-answers)
fsh-generated/resources/CodeSystem-loinc-answerserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers vs ncpi:loinc-answers

fsh-generated/resources/CodeSystem-mondo.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://purl.obolibrary.org/obo/mondo.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl)
fsh-generated/resources/CodeSystem-mondoerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo vs http://purl.obolibrary.org/obo/mondo.owl

fsh-generated/resources/CodeSystem-ncit.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://purl.obolibrary.org/obo/ncit.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated/resources/CodeSystem-nciterrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit vs http://purl.obolibrary.org/obo/ncit.owl

fsh-generated/resources/CodeSystem-ncpi.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'https://nih-ncpi.github.io/ncpi-fhir-ig')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi) does not match the URL (https://nih-ncpi.github.io/ncpi-fhir-ig)
CodeSystem.urlerrorResource id/url mismatch: ncpi/https://nih-ncpi.github.io/ncpi-fhir-ig
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ncpierrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi vs https://nih-ncpi.github.io/ncpi-fhir-ig

fsh-generated/resources/CodeSystem-ncpi-data-types.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'https://nih-ncpi.github.io/ncpi-fhir-ig/datatypes')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-data-types.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-data-types) does not match the URL (https://nih-ncpi.github.io/ncpi-fhir-ig/datatypes)
CodeSystem.urlerrorResource id/url mismatch: ncpi-data-types/https://nih-ncpi.github.io/ncpi-fhir-ig/datatypes
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ncpi-data-typeserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-data-types vs https://nih-ncpi.github.io/ncpi-fhir-ig/datatypes

fsh-generated/resources/CodeSystem-omim.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'https://omim.org/')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/)
fsh-generated/resources/CodeSystem-omimerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim vs https://omim.org/

fsh-generated/resources/CodeSystem-tbd-codes.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes)
CodeSystemwarningHL7 Defined CodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemerrorThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not found. HL7 Published code systems SHALL conform to the ShareableCodeSystem profile
CodeSystemerrorThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not found. HL7 Published code systems SHALL conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-tbd-codeserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes vs http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes

fsh-generated/resources/CodeSystem-v3-hgvs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://varnomen.hgvs.org')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org)
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-v3-hgvserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs vs http://varnomen.hgvs.org

fsh-generated/resources/Condition-disease-example-1.json Show Validation Information (1)

PathSeverityMessage
Condition.code.coding[0] (l42/c8)warningUnknown Code http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma in http://purl.obolibrary.org/obo/ncit.owl - note that the code system is labelled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma'

fsh-generated/resources/Condition-phenotype-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/DiagnosticReport-diagnostic-report-1.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-drs-document-reference-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-research-document-reference-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Group-ncpi-research-study-01-group-01-main.json Show Validation Information (1)

✓

fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide.json Show Validation Information (0)

PathSeverityMessage
ImplementationGuide.definition.resource[6].descriptionwarningvalue should not start or finish with whitespace 'A...Task '
ImplementationGuide.definition.resource[8].descriptionwarningvalue should not start or finish with whitespace 'Grouping...etc. '

fsh-generated/resources/Observation-anvil-summary-cmg.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l7/c8)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig#Summary should be one of 'Summary Data' instead of 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig#Summary'
Observation.component[0].code.coding[0] (l23/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[3].code.coding[0] (l58/c12)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/Observation-anvil-summary-phs000711.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l7/c8)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig#Summary should be one of 'Summary Data' instead of 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig#Summary'
Observation.component[2].code.coding[0] (l47/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[3].code.coding[0] (l58/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[4].code.coding[0] (l69/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[5].code.coding[0] (l80/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[6].code.coding[0] (l91/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[7].code.coding[0] (l101/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[8].code.coding[0] (l111/c12)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/Observation-diagnostic-implication-1.json Show Validation Information (1)

PathSeverityMessage
Observation.component[0].value.ofType(CodeableConcept).coding[0] (l42/c12)informationCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/condition-inheritance-vs' is unknown so the code cannot be validated

fsh-generated/resources/Observation-family-relationship-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-family-relationship-example-2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-family-relationship-example-3.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-family-relationship-example-4.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-variant-example-1.json Show Validation Information (1)

PathSeverityMessage
Observation.component[0].value.ofType(CodeableConcept).coding[0] (l59/c12)informationCode System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated
Observation.component[1].value.ofType(CodeableConcept).coding[0] (l79/c12)informationCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/loinc-answers' is unknown so the code cannot be validated
Observation.component[7].value.ofType(CodeableConcept).coding[0] (l182/c12)informationCode System URI 'http://www.ncbi.nlm.nih.gov/refseq' is unknown so the code cannot be validated

fsh-generated/resources/Organization-organization-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-ncpi-research-study-01-patient-01.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-ncpi-research-study-01-patient-02.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-patient-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-patient-example-2.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-patient-example-3.json Show Validation Information (1)

✓

fsh-generated/resources/Practitioner-practitioner-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/PractitionerRole-practitioner-role-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchStudy-ncpi-research-study-01.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy.primaryPurposeType.coding[0] (l24/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchStudy-research-study-cmg.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy.primaryPurposeType.coding[0] (l8/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchStudy-research-study-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchStudy-research-study-phs000711.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy.primaryPurposeType.coding[0] (l8/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchSubject-research-subject-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-example-2.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-example-3.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-01.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-02.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-specimen-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-disease.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-family-relationship.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-drs-attachment.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-drs-document-reference.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-research-document-reference.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-research-study.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.snapshot.element[19].pattern.ofType(Coding)informationThe repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users)

fsh-generated/resources/StructureDefinition-ncpi-specimen-task.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-phenotype.json Show Validation Information (1)

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fsh-generated/resources/StructureDefinition-study-group.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.snapshot.element[13].pattern.ofType(CodeableConcept).coding[0]errorUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982' (see Tx log)
StructureDefinition.differential.element[3].pattern.ofType(CodeableConcept).coding[0]errorUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982' (see Tx log)

fsh-generated/resources/StructureDefinition-supporting-info.json Show Validation Information (1)

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fsh-generated/resources/Task-task-example-1.json Show Validation Information (1)

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fsh-generated/resources/Task-task-example-2.json Show Validation Information (1)

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fsh-generated/resources/ValueSet-condition-inheritance-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSetwarningThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile

fsh-generated/resources/ValueSet-disease-codes.json Show Validation Information (1)

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fsh-generated/resources/ValueSet-loinc-answers.json Show Validation Information (1)

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fsh-generated/resources/ValueSet-ncpi-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSetwarningThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile

fsh-generated/resources/ValueSet-phenotype-codes.json Show Validation Information (1)

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fsh-generated/resources/ValueSet-tbd-codes.json Show Validation Information (1)

PathSeverityMessage
ValueSet.where(url = 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes)
fsh-generated/resources/ValueSet-tbd-codeserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes vs http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes

Suppressed Messages (Warnings, hints, broken links)

No suppressed messsages

Errors sorted by type

CODESYSTEM_SHAREABLE_MISSING

fsh-generated/resources/CodeSystem-ConditionInheritanceMode.jsonThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ConditionInheritanceMode.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-hpo.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ncpi.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ncpi-data-types.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-v3-hgvs.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

CODESYSTEM_SHAREABLE_MISSING_HL7

fsh-generated/resources/CodeSystem-tbd-codes.jsonThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not found. HL7 Published code systems SHALL conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-tbd-codes.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not found. HL7 Published code systems SHALL conform to the ShareableCodeSystem profile

RESOURCE_CANONICAL_MISMATCH

fsh-generated/resources/CodeSystem-hpo.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
fsh-generated/resources/CodeSystem-loinc-answers.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers) does not match the URL (ncpi:loinc-answers)
fsh-generated/resources/CodeSystem-mondo.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl)
fsh-generated/resources/CodeSystem-ncit.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated/resources/CodeSystem-ncpi.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi) does not match the URL (https://nih-ncpi.github.io/ncpi-fhir-ig)
fsh-generated/resources/CodeSystem-ncpi-data-types.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-data-types.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-data-types) does not match the URL (https://nih-ncpi.github.io/ncpi-fhir-ig/datatypes)
fsh-generated/resources/CodeSystem-omim.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/)
fsh-generated/resources/CodeSystem-tbd-codes.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes)
fsh-generated/resources/CodeSystem-v3-hgvs.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org)
fsh-generated/resources/ValueSet-tbd-codes.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes)

RESOURCE_ID_MISMATCH

fsh-generated/resources/CodeSystem-ncpi.jsonResource id/url mismatch: ncpi/https://nih-ncpi.github.io/ncpi-fhir-ig
fsh-generated/resources/CodeSystem-ncpi-data-types.jsonResource id/url mismatch: ncpi-data-types/https://nih-ncpi.github.io/ncpi-fhir-ig/datatypes

TERMINOLOGY_TX_SYSTEM_NO_CODE

fsh-generated/resources/Observation-anvil-summary-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-ncpi-research-study-01.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-research-study-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-research-study-phs000711.jsonA code with no system has no defined meaning. A system should be provided

Terminology_PassThrough_TX_Message

fsh-generated/resources/Condition-disease-example-1.jsonUnknown Code http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma in http://purl.obolibrary.org/obo/ncit.owl - note that the code system is labelled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma'
fsh-generated/resources/Observation-anvil-summary-cmg.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig#Summary should be one of 'Summary Data' instead of 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig#Summary'
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig#Summary should be one of 'Summary Data' instead of 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig#Summary'
fsh-generated/resources/StructureDefinition-study-group.jsonUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982'
fsh-generated/resources/StructureDefinition-study-group.jsonUnable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982'

Terminology_TX_System_NotKnown

fsh-generated/resources/Observation-diagnostic-implication-1.jsonCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/condition-inheritance-vs' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/loinc-answers' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'http://www.ncbi.nlm.nih.gov/refseq' is unknown so the code cannot be validated

Type_Specific_Checks_DT_String_WS

fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide.jsonvalue should not start or finish with whitespace 'A...Task '
fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide.jsonvalue should not start or finish with whitespace 'Grouping...etc. '

VALUESET_SHAREABLE_MISSING

fsh-generated/resources/ValueSet-condition-inheritance-vs.jsonThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile
fsh-generated/resources/ValueSet-ncpi-vs.jsonThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile